Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013922: Natrialba magadii ATCC 43099 chromosome, complete genome

NCBI: NC_013922

Host Lineage: Natrialba magadii; Natrialba; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Isolation: Lake Magadi in Kenya; Temp: Mesophile; Habitat: Fresh water. Natrialba magadii was isolated from Lake Magadi in Kenya. This organism is a extreme halophilic, alkaliphilic member of the Archaea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121000*4259921600Island text1.8127928.903930.5187Neighbours11BLASTN21000.gbk
2495877609926513Island text3.9479946.359927.0997Neighbours12BLASTN+IslandViewer 49587.gbk
313824618041242167Island text4.9359647.064527.3063Neighbours12BLASTN+IslandViewer 138246.gbk
4230842*26373632895Island text2.2579534.227533.1843Neighbours12BLASTN+IslandViewer 230842.gbk
5331847*39351061664Island text2.9279238.331429.0322Neighbours12BLASTN+IslandViewer 331847.gbk
679918682239823213Island text1.7232630.109829.5225Neighbours11BLASTN+IslandViewer 799186.gbk
793809195965321563Island text1.5500424.761918.1346Neighbours11BLASTN938091.gbk
81201456122686925414Island text1.6950127.340221.7018Neighbours11BLASTN+IslandViewer 1201456.gbk
91628862*166059931738Island text1.9593830.639630.2173Neighbours12BLASTN+IslandViewer 1628862.gbk
101674721*169520320483Island text1.8528725.116534.6644Neighbours11BLASTNIslandViewer 1674721.gbk
111855000187270117702Island text1.5009723.206522.0733Neighbours11BLASTN1855000.gbk
121911338*193593524598Island text2.1009329.29736.706Neighbours11BLASTN+1911338.gbk
132110894213249021597Island text1.5883427.520828.7809Neighbours11BLASTN+2110894.gbk
142202889*222184218954Island text1.5271923.027119.5883Neighbours11BLASTN+2202889.gbk
152463299248359920301Island text1.5680923.151827.7845Neighbours11BLASTN2463299.gbk
162759914*278217222259Island text1.2901823.534825.7705Neighbours11BLASTN+2759914.gbk
173290356*331334022985Island text1.8781925.426134.1467Neighbours12BLASTN+IslandViewer 3290356.gbk
183696697*371559918903Island text1.5429523.846922.3109Neighbours11BLASTN+IslandViewer 3696697.gbk