Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013921: Thermoanaerobacter italicus Ab9 chromosome, complete genome

NCBI: NC_013921

Host Lineage: Thermoanaerobacter italicus; Thermoanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Isolation: Mud, thermal spa; Italy, Abano Terme; Country: Italy; Temp: Thermophile; Temp: 70C; Habitat: Fresh water, Mud. Anaerobic, thermophilic, spore-forming Gram-positive bacterium. Thermoanaerobacter italicus was isolated from a thermal spa in Italy. This organism is able to degrade pectin and pectate at high temperatures.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136000*5820522206Island text3.4811732.088853.7121Neighbours21BLASTN+36000.gbk
280856*10150020645Island text3.8692329.097851.0294Neighbours21BLASTN80856.gbk
375580077917523376Island text1.9316324.303126.6081Neighbours21BLASTN+755800.gbk
41344000*136970025701Island text3.3950940.119745.8129Neighbours21BLASTN+1344000.gbk
51396500*141910522606Island text2.1690226.517546.6027Neighbours21BLASTN+IslandViewer 1396500.gbk
61614397163416119765Island text1.8229922.768744.439Neighbours21BLASTN+1614397.gbk
71915377193634320967Island text2.0812925.160439.662Neighbours21BLASTN+IslandViewer 1915377.gbk
81977444*203224454801Island text3.6928227.440246.2944Neighbours21BLASTN+1977444.gbk
92293411*231305919649Island text2.2583522.552939.7978Neighbours21BLASTN2293411.gbk
102375900240259926700Island text2.2733430.66241.1828Neighbours21BLASTN+IslandViewer 2375900.gbk