Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013895: Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete

NCBI: NC_013895

Host Lineage: Clostridiales genomosp. BVAB3; Clostridiales; ; unclassified Clostridiales; Firmicutes; Bacteria

General Information: This organism was isolated from the human urogenital tract, associated with bacterial vaginosis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135410*5828922880Island text1.4418229.18951.273Neighbours35+35410.gbk
266641*9885532215Island text1.9637828.654429.7197Neighbours21BLASTN+66641.gbk
3117429*16659949171Island text2.8338130.584322.836Neighbours21BLASTN+117429.gbk
4188225*20876120537Island text1.5236230.301652.2293Neighbours37BLASTN+188225.gbk
525285827318120324Island text1.5666229.556852.142Neighbours31BLASTN+252858.gbk
639789042084222953Island text1.5945630.502247.588Neighbours35BLASTN+IslandViewer 397890.gbk
7605488*63221326726Island text3.3164332.840825.5642Neighbours21BLASTN+605488.gbk
81086500*110848121982Island text2.256228.866736.6143Neighbours21BLASTN1086500.gbk
91203000122807925080Island text3.1853129.505512.6546Neighbours21BLASTN+1203000.gbk
101282566*130189119326Island text1.8871228.603333.8622Neighbours21BLASTN+IslandViewer 1282566.gbk
111332832138009947268Island text1.6716731.216424.8877Neighbours21BLASTN+1332832.gbk
121429023*145002621004Island text1.5485531.335147.6916Neighbours39BLASTN1429023.gbk