Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013894: Thermocrinis albus DSM 14484 chromosome, complete genome

NCBI: NC_013894

Host Lineage: Thermocrinis albus; Thermocrinis; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Isolation: whitisch steamers of the Hveragerthi area; Country: Iceland; Temp: Hyperthermophile; Temp: 80C; Habitat: Fresh water, Hot spring. Filament-forming thermophile. Thermocrinis albus can be isolated from sulfur-rich hot springs. In an environment with a continuous flow this organism becomes filamentous, forming long white streamers.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112778927789Island text1.8741628.859429.6306Neighbours323BLASTN+1.gbk
2117644*14411826475Island text1.9024330.808924.559Neighbours323BLASTN+IslandViewer 117644.gbk
341577643425218477Island text1.543525.060836.3382Neighbours323BLASTN415776.gbk
4464907*48339218486Island text1.6737326.124835.2114Neighbours323BLASTNIslandViewer 464907.gbk
5543901*56793724037Island text1.5848527.033738.1685Neighbours323BLASTN543901.gbk
6578271*60397425704Island text1.6323828.646548.4288Neighbours323BLASTN578271.gbk
7672840*70832435485Island text3.1270635.869716.3685Neighbours21BLASTN+IslandViewer 672840.gbk
81194458122196827511Island text1.9742729.727331.7634Neighbours323BLASTN+IslandViewer 1194458.gbk
91288282131284924568Island text1.8515727.714630.0158Neighbours323BLASTNIslandViewer 1288282.gbk
101380564*141152230959Island text2.281531.348222.2997Neighbours323BLASTN+IslandViewer 1380564.gbk
111476956*150149924544Island text1.9102328.460935.4324Neighbours323BLASTN+IslandViewer 1476956.gbk