Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013892: Xenorhabdus bovienii SS-2004 chromosome, complete genome

NCBI: NC_013892

Host Lineage: Xenorhabdus bovienii; Xenorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Insect pathogenic, facultatively anaerobic, non-spore forming Gram-negative bacterium. This genus is a group of insect pathogens which live in a mutualistic relationship with the soil nematode family Steinernematidae. Free-living, juvenile Steinernema spp. enter insect larvae through the digestive tract. They penetrate the larvae body cavity and release Xenorhabdus spp. into the hemolymph (blood). The bacteria multiply rapidly, killing the larvae, and providing suitable nutrient conditions for the growth and reproduction of the Steinernema spp. The nematode matures and reproduces. The new juveniles reassociate with Xenorhabdus spp. and are released into the soil.Xenorhabdus bovienii. Unlike Xenorhabdus nematophila, which is found in only in Steinernema carpocapsae, Xenorhabdus bovienii is associated with several different species of Steinernema.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111488413697922096Island text1.8183233.716451.3765Neighbours53BLASTN+IslandViewer 114884.gbk
2202778*22823225455Island text1.6791634.819537.4978Neighbours41BLASTN+IslandViewer 202778.gbk
327429730709932803Island text4.336732.896517.8141Neighbours51BLASTN+IslandViewer 274297.gbk
467100069684725848Island text2.1350344.04134.3879BLASTN+671000.gbk
575330779208838782Island text2.1582234.806750.8344Neighbours51BLASTN+753307.gbk
685336687610022735Island text1.9875638.088545.7017Neighbours51BLASTN+853366.gbk
7992811101573722927Island text1.8071742.608843.6114Neighbours41BLASTN+IslandViewer 992811.gbk
81272448130338830941Island text1.7576340.524529.2616Neighbours53BLASTN+1272448.gbk
91457500147909921600Island text1.3957134.052830.5214Neighbours41BLASTN+IslandViewer 1457500.gbk
101483000150309920100Island text1.5590436.287734.0553Neighbours41BLASTN+IslandViewer 1483000.gbk
111503162155151148350Island text1.7759437.649442.8098Neighbours51BLASTN+1503162.gbk
121890500*197683686337Island text1.7506534.210826.2747BLASTN+IslandViewer 1890500.gbk
132005480202433718858Island text1.565438.393726.5907BLASTN+2005480.gbk
142108175*216277254598Island text1.6503337.853729.5452Neighbours41BLASTN+IslandViewer 2108175.gbk
152332319*235727824960Island text2.3223546.813735.1546Neighbours322BLASTN2332319.gbk
162638451*267708438634Island text1.5627832.487239.3166BLASTN+2638451.gbk
172689645271767028026Island text2.0937335.056427.4555Neighbours21BLASTN+2689645.gbk
183278647332182643180Island text1.7171240.051634.6037Neighbours41BLASTN+3278647.gbk
193745749377071524967Island text1.5094533.15937.8122Neighbours41BLASTN+3745749.gbk
203803278383318729910Island text5.2029733.326215.5926Neighbours37BLASTN+IslandViewer 3803278.gbk
214129500*415480825309Island text1.5660635.402927.8619Neighbours21BLASTNIslandViewer 4129500.gbk