Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013891: Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome

NCBI: NC_013891

Host Lineage: Listeria seeligeri; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Listeria are Gram-positive, motile, facultative anaerobic bacteria; L.seeligeri is one of the nonpathogenic members of the genus. Strain LSCC 3954, the type strain for this species, is a soil isolate from Germany. A contaminant of soft cheese, processed meat, and smoked seafood. More than 100 strains of this organism have been isolated from environmental samples and healthy animal carriers. This species can be distinguished from other Listeria by its ability to produce acid from D-xylose, L-rhamnose, and alpha-methyl-D-mannoside.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1353625*37360819984Island text1.5310322.110935.7245Neighbours21BLASTN353625.gbk
257574659606620321Island text1.7948721.965938.3667Neighbours21BLASTN575746.gbk
3640784*66809927316Island text1.9879323.870442.3601Neighbours21BLASTN+640784.gbk
41639694166876429071Island text1.802124.023739.1148Neighbours21+IslandViewer 1639694.gbk
51861294*188201320720Island text1.5618722.365436.8973Neighbours21BLASTN1861294.gbk
62643085266609923015Island text1.4958422.981539.7125Neighbours21BLASTN+2643085.gbk