Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013889: Thioalkalivibrio sp. K90mix chromosome, complete genome

NCBI: NC_013889

Host Lineage: Thioalkalivibrio; Thioalkalivibrio; Ectothiorhodospiraceae; Chromatiales; Proteobacteria; Bacteria

General Information: Isolation: Highly alkaline soda lake sediment; Temp: Mesophile. Thioalkalivibrio sp. (strain K90mix) is an extremely salt tolerant (haloalkaliphilic), chemolithoautotrophic, sulfur-oxidizing Gram-negative bacterium isolated from a mixture of soda lake sediments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121682923559918771Island text1.8222717.354727.817Neighbours11BLASTN+IslandViewer 216829.gbk
232511834919724080Island text2.4361520.776440.5064Neighbours11BLASTNIslandViewer 325118.gbk
3413909*43968925781Island text3.3078827.09427.0082Neighbours11BLASTN+413909.gbk
41159343120135542013Island text1.8151719.518419.5607Neighbours11BLASTN+IslandViewer 1159343.gbk
51202385*122409321709Island text1.6911517.921625.3401Neighbours11BLASTN+IslandViewer 1202385.gbk
61382705*140993927235Island text1.6708422.94733.5524Neighbours11BLASTN+IslandViewer 1382705.gbk
71439326*145805518730Island text1.5726916.743728.6088Neighbours11BLASTN+1439326.gbk
81514799*153542720629Island text1.5457818.484533.9181Neighbours11BLASTN+1514799.gbk
91623697*165176828072Island text1.7545216.640333.3658Neighbours11BLASTN+IslandViewer 1623697.gbk
101740858176918228325Island text1.7692722.201930.4249Neighbours11BLASTN+IslandViewer 1740858.gbk
112561381258452423144Island text1.4703719.339735.2784Neighbours11BLASTN2561381.gbk
122603914*262824624333Island text1.788916.439723.5534Neighbours11BLASTNIslandViewer 2603914.gbk