Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013861: Legionella longbeachae NSW150, complete genome

NCBI: NC_013861

Host Lineage: Legionella longbeachae; Legionella; Legionellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Legionella longbeachae is the predominant cause of Legionnaires' disease in Australia, but is an uncommon pathogen in other parts of the world. Legionella longbeachae infection has been associated with exposure to potting soil in Australia, the USA, Japan and the Netherlands. L. longbeachae is found predominantly in moist potting soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1311908*33528723380Island text1.6837119.470531.2645Neighbours21BLASTN311908.gbk
246950050109231593Island text1.8720522.453839.3454Neighbours21BLASTN+469500.gbk
372864875231223665Island text1.5191419.595133.9079Neighbours21BLASTN+728648.gbk
41498212151694818737Island text1.5417418.634531.9588Neighbours21BLASTN+1498212.gbk
53215640323817522536Island text1.5027619.96937.0054Neighbours21BLASTN3215640.gbk
63341955336443022476Island text1.7915820.441527.8878Neighbours21BLASTN+IslandViewer 3341955.gbk
73659094368253823445Island text1.4301126.659829.4737Neighbours21BLASTN3659094.gbk