Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013855: Azospirillum sp. B510 plasmid pAB510a, complete sequence

NCBI: NC_013855

Host Lineage: Azospirillum; Azospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Azospirillum are commonly isolated from the rhizosphere and root surfaces from a wide variety of plants. Azospirillum species are considered to be plant growth promoting organisms, producing plant hormones for cell elongation (auxins), cell division and growth (cytokinins) and stem elongation (gibberellins). These compounds contribute to an enhanced uptake of nutrients and water and thus increased plant growth. Azospirillum sp. B510 was isolated from rice in Japan.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1563447459918256Island text1.5490517.584713.6192Neighbours11BLASTN+56344.gbk
219677823386637089Island text2.1563825.489821.6864Neighbours11BLASTN196778.gbk
3558831*58109922269Island text2.2682720.418623.345Neighbours11BLASTN+558831.gbk
4670285*69312522841Island text1.5380318.114718.2696Neighbours11BLASTN+670285.gbk
589265791607423418Island text2.3544919.949727.9355Neighbours11BLASTN+892657.gbk
6964000*98966925670Island text2.1652720.543916.9718Neighbours11BLASTN964000.gbk
71268424*129242324000Island text2.4237821.298726.0994Neighbours11BLASTN1268424.gbk