Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013854: Azospirillum sp. B510, complete genome

NCBI: NC_013854

Host Lineage: Azospirillum; Azospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Azospirillum are commonly isolated from the rhizosphere and root surfaces from a wide variety of plants. Azospirillum species are considered to be plant growth promoting organisms, producing plant hormones for cell elongation (auxins), cell division and growth (cytokinins) and stem elongation (gibberellins). These compounds contribute to an enhanced uptake of nutrients and water and thus increased plant growth. Azospirillum sp. B510 was isolated from rice in Japan.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123785725640718551Island text1.5284119.485714.0821Neighbours11BLASTNIslandViewer 237857.gbk
233054335359923057Island text1.67119.602924.997Neighbours11BLASTN+IslandViewer 330543.gbk
3513196*53916325968Island text2.5239220.637823.9788Neighbours11BLASTN+513196.gbk
41277106*129609918994Island text1.5196317.157116.9205Neighbours11BLASTN+IslandViewer 1277106.gbk
51686997170921322217Island text2.0356419.37723.1545Neighbours11BLASTN+IslandViewer 1686997.gbk
62148215217320524991Island text1.7692517.755121.5578Neighbours11BLASTN+IslandViewer 2148215.gbk
72714033*273463520603Island text1.5691418.031123.628Neighbours11BLASTN+IslandViewer 2714033.gbk
83126385315026623882Island text1.6567319.376219.8319Neighbours11BLASTN+IslandViewer 3126385.gbk
93200912*322443023519Island text2.4478121.163227.3813Neighbours11BLASTN+3200912.gbk