Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013853: Streptococcus mitis B6, complete genome

NCBI: NC_013853

Host Lineage: Streptococcus mitis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from a hospital in Bochum, Germany. Streptococcus mitis. This organism is a commensal normally found in the human mouth, throat and nasopharynx. It is not usually pathogenic but can be recovered from ulcerated teeth, sinuses and blood or heart lesions from subacute endocarditis (inflammation of the membrane lining the heart) patients. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
195614497943623293Island text2.573931.85852.6282BLASTN956144.gbk
21295000*131959624597Island text2.7804233.377453.1007Neighbours14BLASTN+IslandViewer 1295000.gbk
31538748156187623129Island text2.2507829.573546.5713BLASTN+IslandViewer 1538748.gbk
42048867207372124855Island text2.8623332.12752.125Neighbours21BLASTN+IslandViewer 2048867.gbk