Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013851: Allochromatium vinosum DSM 180 chromosome, complete genome

NCBI: NC_013851

Host Lineage: Allochromatium vinosum; Allochromatium; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Isolation: Ditch water; Temp: Mesophile; Temp: 25C; Habitat: Fresh water. Allochromatium vinosum, formerly Chromatium vinosum, is a sulfur-oxidizing anoxygenic phototroph. These organisms use sulfur compounds as electron donors and often contain internal sulfur deposits.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122895326692337971Island text4.8529945.653126.2142Neighbours11BLASTN+IslandViewer 228953.gbk
260808963129123203Island text1.5957923.427425.0812Neighbours11BLASTN+608089.gbk
375950077811418615Island text1.517924.08626.9846Neighbours11BLASTNIslandViewer 759500.gbk
485939688482325428Island text1.9764728.215423.9534Neighbours11BLASTNIslandViewer 859396.gbk
5949973*98051930547Island text3.6841237.099828.701Neighbours11BLASTNIslandViewer 949973.gbk
61866523*188892822406Island text1.7542922.743726.3682Neighbours11BLASTN1866523.gbk
72211120223982528706Island text2.6115838.059625.7415Neighbours11BLASTNIslandViewer 2211120.gbk
82317091*233893321843Island text1.6241223.300329.8888Neighbours11BLASTN+IslandViewer 2317091.gbk
92441407246552624120Island text2.0450631.983625.0609Neighbours11BLASTNIslandViewer 2441407.gbk
102610847263605825212Island text2.1369427.31421.784Neighbours11BLASTNIslandViewer 2610847.gbk
112729000*275222523226Island text1.5674624.473334.2878Neighbours11BLASTN+2729000.gbk
123142182*316259920418Island text1.9688923.334126.0385Neighbours11BLASTNIslandViewer 3142182.gbk
133166969319361626648Island text2.3752629.928833.8133Neighbours11BLASTN+IslandViewer 3166969.gbk
143300278332129021013Island text1.5019324.370732.7202Neighbours11BLASTNIslandViewer 3300278.gbk
153321853*335256230710Island text2.2576531.703326.5414Neighbours11BLASTNIslandViewer 3321853.gbk
163392644*341715124508Island text1.8693820.494934.0906Neighbours11BLASTNIslandViewer 3392644.gbk
173478153*350069022538Island text2.6266624.765631.5934Neighbours11BLASTN+IslandViewer 3478153.gbk