Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013850: Klebsiella variicola At-22 chromosome, complete genome

NCBI: NC_013850

Host Lineage: Klebsiella variicola; Klebsiella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Rhizosphere, Rhizosphere-colonizing; Isolation:Atta cephalotes fungus garden. Klebsiella variicola is closely related to the human pathogen Klebsiella pneumoniae. This organism has been isolated from plants (such as banana, rice, sugar cane and maize) as well as clinical samples.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1109500*13209922600Island text1.9616135.291927.7976Neighbours41BLASTN+IslandViewer 109500.gbk
2985331100742022090Island text1.6497932.970620.1288Neighbours41BLASTNIslandViewer 985331.gbk
31198134*121800019867Island text1.8336833.943352.9023Neighbours41BLASTN1198134.gbk
41658010169680438795Island text6.9413153.86324.1047Neighbours41BLASTN+IslandViewer 1658010.gbk
51753716*178468730972Island text2.93243.143830.0815Neighbours41BLASTNIslandViewer 1753716.gbk
61887556*193878551230Island text1.8126232.947236.5937Neighbours41BLASTN+IslandViewer 1887556.gbk
72103469*214696843500Island text2.022836.700425.2846Neighbours41BLASTN+IslandViewer 2103469.gbk
82182337224909966763Island text1.7383335.677634.2908Neighbours41BLASTN+IslandViewer 2182337.gbk
92357608238209924492Island text1.8560637.920823.0588Neighbours41BLASTNIslandViewer 2357608.gbk
102624899265699232094Island text2.5419541.529521.1278Neighbours41BLASTN+IslandViewer 2624899.gbk
112685835271732531491Island text1.8575837.573226.1014Neighbours41BLASTN+IslandViewer 2685835.gbk
122846069288409738029Island text2.1636440.175926.9225Neighbours41BLASTN+IslandViewer 2846069.gbk
133303500332954126042Island text2.5279842.601325.4325Neighbours41BLASTN+3303500.gbk
143340882*337329232411Island text2.1549139.581729.8526Neighbours41BLASTN+3340882.gbk
154612812*463649923688Island text1.4744632.751729.3215Neighbours41BLASTN+4612812.gbk
164829455*485950430050Island text4.9744249.783420.8762Neighbours41BLASTN+IslandViewer 4829455.gbk
174993307502215628850Island text2.4449840.582725.7218Neighbours41BLASTN+IslandViewer 4993307.gbk