Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013849: Ferroglobus placidus DSM 10642 chromosome, complete genome

NCBI: NC_013849

Host Lineage: Ferroglobus placidus; Ferroglobus; Archaeoglobaceae; Archaeoglobales; Euryarchaeota; Archaea

General Information: Isolation: Hallow submarine hydrothermal system at Vulcano, Italy; Temp: Hyperthermophile; Temp: 85C; Habitat: Fresh water, Hydrothermal vent. Iron-oxidizing hyperthermophilic archaeon. Ferroglobus placidus was isolated from a hydrothermal sediment at Vulcano, Italy. This organism is able to oxidize iron.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119404*4335423951Island text1.4445530.933933.7069Neighbours36BLASTN+19404.gbk
233735036569028341Island text1.8294930.746917.3773Neighbours21BLASTN+IslandViewer 337350.gbk
3376676*39479318118Island text2.0631230.283829.2306Neighbours36BLASTN+IslandViewer 376676.gbk
4397947*45732559379Island text1.5682136.477938.3377Neighbours349BLASTNIslandViewer 397947.gbk
5466091*50590839818Island text1.5355236.572630.4813Neighbours36BLASTNIslandViewer 466091.gbk
662781165054122731Island text1.6332730.18653.0089Neighbours36BLASTN+627811.gbk
7651158*67409922942Island text2.0926930.614754.7326Neighbours36BLASTN651158.gbk
893391395777423862Island text2.1278729.123434.9449Neighbours36BLASTN+933913.gbk
9985978*100802922052Island text2.1750429.133252.1732Neighbours36BLASTN+985978.gbk
101034472*106259928128Island text1.6856333.678335.1194Neighbours21+1034472.gbk
111396051*142414428094Island text2.4218437.519832.8911Neighbours36BLASTN+1396051.gbk
121595924161837022447Island text2.3122126.939430.4178Neighbours211595924.gbk