Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013799: Hydrogenobacter thermophilus TK-6, complete genome

NCBI: NC_013799

Host Lineage: Hydrogenobacter thermophilus; Hydrogenobacter; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Hydrogenobacter thermophilus is a strictly thermophilic, obligately chemolithotrophic, hydrogen-oxidizing bacterium isolated from hot springs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2742027420Island text2.4438632.012525.5903Neighbours323BLASTNIslandViewer 1.gbk
2282500*30973227233Island text1.8015330.297131.1856Neighbours323BLASTN+282500.gbk
3502126*52557223447Island text1.7197927.112443.6878Neighbours323BLASTN+IslandViewer 502126.gbk
4775619*81513839520Island text1.7845326.751245.3528Neighbours323BLASTN+775619.gbk
5810636*84120130566Island text1.4973733.860445.296Neighbours323BLASTN+IslandViewer 810636.gbk
6927300*95612528826Island text2.609634.994816.0222Neighbours21BLASTN+IslandViewer 927300.gbk
71012884105305040167Island text1.5912226.00932.561Neighbours21BLASTN+1012884.gbk
81117750*114011522366Island text1.4534731.742531.6116Neighbours323BLASTN1117750.gbk