Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013792: Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence

NCBI: NC_013792

Host Lineage: Bacillus pseudofirmus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain was isolated from soil in New York State by alkaline enrichment cultures. Because of its pH range and genetic accessibility, this alkaliphile has been extensively used as the model organism for studies of the bioenergetics of life at extremely high pH. This organism is a facultative, extreme alkaliphile that grows non-fermentatively as well as fermentatively in a pH range from near neutral to above pH 11.2.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133893*5284318951Island text1.5037117.473222.1891Neighbours21BLASTN+33893.gbk
2109203*13509925897Island text1.6506819.288432.5857Neighbours21BLASTN+109203.gbk
318035020476724418Island text1.6267216.980825.9106Neighbours21BLASTN+180350.gbk
422428324378219500Island text1.7579519.015532.7019Neighbours21+224283.gbk