Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013791: Bacillus pseudofirmus OF4 chromosome, complete genome

NCBI: NC_013791

Host Lineage: Bacillus pseudofirmus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain was isolated from soil in New York State by alkaline enrichment cultures. Because of its pH range and genetic accessibility, this alkaliphile has been extensively used as the model organism for studies of the bioenergetics of life at extremely high pH. This organism is a facultative, extreme alkaliphile that grows non-fermentatively as well as fermentatively in a pH range from near neutral to above pH 11.2.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157984259814318302Island text1.4743327.279937.3249Neighbours21BLASTN579842.gbk
2875224*89669821475Island text1.547932.977946.6074BLASTN+875224.gbk
31033700105722423525Island text1.5697127.506546.6229Neighbours21BLASTN1033700.gbk
41082951*110442521475Island text1.5789926.867240.5881Neighbours21BLASTN+1082951.gbk
51152500117335420855Island text1.5571725.261437.6769Neighbours21BLASTN+1152500.gbk
61291339*131497523637Island text1.6317425.133832.4644Neighbours21BLASTN1291339.gbk
71323903134535421452Island text1.5311323.696737.7628Neighbours21BLASTN+1323903.gbk
81507943*152638418442Island text1.973422.610737.4102Neighbours21BLASTN1507943.gbk
92273389229479821410Island text1.7356224.170141.873Neighbours21BLASTN+2273389.gbk
102839516286074121226Island text1.8412923.748243.0088Neighbours21BLASTN+2839516.gbk