Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013790: Methanobrevibacter ruminantium M1 chromosome, complete genome

NCBI: NC_013790

Host Lineage: Methanobrevibacter ruminantium; Methanobrevibacter; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Methanobrevibacter ruminantium is a dominant ruminant methanogen. It can be used as an indicator of fecal pollution from domesticated ruminants in environmental water samples.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185889*11171625828Island text1.8046720.00433.5256Neighbours21BLASTN85889.gbk
212328114763624356Island text1.559823.111232.438Neighbours21BLASTN123281.gbk
315300017833425335Island text1.5057325.133832.8298Neighbours21BLASTN153000.gbk
440668144500338323Island text1.7454621.955431.0116Neighbours21+IslandViewer 406681.gbk
5485468*51894933482Island text1.5583923.939126.3095Neighbours21BLASTN+485468.gbk
658347460952626053Island text2.1469523.34243.758Neighbours21BLASTN583474.gbk
7756000*77425218253Island text1.508725.68743.5284Neighbours21BLASTN+756000.gbk
81081757*110409922343Island text1.4872220.896237.2213Neighbours21BLASTN1081757.gbk
91115887*113728821402Island text2.2122422.461437.7185Neighbours21BLASTN1115887.gbk
101228943126045831516Island text1.4078631.736441.5885Neighbours211228943.gbk
112030960*205466623707Island text2.4127125.402245.0187Neighbours21BLASTN2030960.gbk
122131000*215309922100Island text2.2926326.858144.2854Neighbours21BLASTN2131000.gbk
132337000*235860121602Island text1.9918622.679331.1954Neighbours21BLASTN2337000.gbk
142617014264964632633Island text1.7231924.647729.8277Neighbours21BLASTN2617014.gbk
152690740*273364642907Island text2.1244924.102536.6221Neighbours21BLASTN2690740.gbk
162816500283409917600Island text1.4847722.537732.3486Neighbours21IslandViewer 2816500.gbk
172865843*288540719565Island text1.5638520.04526.2699Neighbours21BLASTN+2865843.gbk