Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013771: Cyanobacterium UCYN-A, complete genome

NCBI: NC_013771

Host Lineage: Atelocyanobacterium thalassa; Atelocyanobacterium; ; Chroococcales; Cyanobacteria; Bacteria

General Information: UCYN-A cyanobacteria are species of nitrogen-fixing marine cyanobacteria that lack the oxygen producing photosystem II complex of the photosynthetic apparatus, the enzymes of the Calvin and tricarboxylic acid cycles, as well as several enzymes involved in amino acid synthesis. The cyanobacteria live in symbiosis with photosynthetic eukaryotic cells, specifically those of a single-celled species of algae.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1393835*41509921265Island text1.5875715.417120.4556Neighbours21BLASTN+393835.gbk
268496671109926134Island text1.987317.996120.197Neighbours21BLASTN+684966.gbk
380304282533222291Island text1.9431214.351315.3212Neighbours21BLASTN803042.gbk
41171251*120363132381Island text2.0241817.135826.8247Neighbours21BLASTN+1171251.gbk