Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013769: Sulfolobus islandicus L.D.8.5 chromosome, complete genome

NCBI: NC_013769

Host Lineage: Sulfolobus islandicus; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Isolation: Lassen National Park in California; Country: USA; Temp: Hyperthermophile; Temp: 75 - 85C; Habitat: Fresh water. Hyperthermophilic acidophilic sulfur-metabolizing archeon. Sulfolobus islandicus is a thermo-acidophilic archeae commonly identified in hot, acidic sulfur springs. This organism can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. In addition, Sulfolobus islandicus isolates from different areas in Russia, Iceland, and the United States have been shown to be genetically distinct from each other making this organism useful for comparative analysis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18758211193124350Island text2.1894618.652735.3819Neighbours21BLASTN+87582.gbk
2123958*14812724170Island text1.8358317.068932.373Neighbours21BLASTN123958.gbk
331678935783841050Island text1.9199418.643124.5546Neighbours21BLASTN+316789.gbk
480000082209922100Island text1.6950420.833133.1222Neighbours323BLASTN+800000.gbk
582693384626119329Island text1.7228619.684331.77Neighbours323BLASTN826933.gbk
691400093775423755Island text1.5269320.104827.6504Neighbours323BLASTN+IslandViewer 914000.gbk
796107298017819107Island text1.5200619.961925.8781Neighbours323BLASTN+IslandViewer 961072.gbk
81294359*131593721579Island text2.5287335.459833.9291BLASTN+IslandViewer 1294359.gbk
91341438138113039693Island text1.5375127.847823.6679Neighbours21BLASTN+IslandViewer 1341438.gbk
101403324*143378630463Island text1.7571124.277828.5911Neighbours21BLASTN1403324.gbk
111478546*151798939444Island text2.4172119.194334.8099Neighbours21BLASTN1478546.gbk
121528196*155139523200Island text2.5568417.886733.5394Neighbours21BLASTN+1528196.gbk
131591000*161125820259Island text2.4606820.636637.8846Neighbours21BLASTN+1591000.gbk
141705500173321127712Island text1.6266722.552922.1601Neighbours323BLASTN+IslandViewer 1705500.gbk
151739363*175870119339Island text1.9163820.433434.0788Neighbours21BLASTN+1739363.gbk
161841908*186603924132Island text3.2202218.174429.6687Neighbours21BLASTN1841908.gbk
171908164*194646438301Island text2.6406218.3736.3443Neighbours21BLASTN+1908164.gbk
181993557*201449420938Island text2.7698119.582734.4169Neighbours21BLASTN+1993557.gbk
192335062235926824207Island text2.4165620.013634.9665Neighbours323BLASTN+2335062.gbk
202363980238415520176Island text1.3164519.339729.224Neighbours21BLASTN2363980.gbk
212405248242738722140Island text2.0665419.683932.4095Neighbours21BLASTN+IslandViewer 2405248.gbk
222445245246433319089Island text1.5739218.950627.7653Neighbours323BLASTN2445245.gbk
232591065261204920985Island text1.4704719.072218.364Neighbours21BLASTN+2591065.gbk
242685000270440919410Island text2.0991920.186933.9566Neighbours323BLASTN+2685000.gbk