Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013757: Geodermatophilus obscurus DSM 43160, complete genome

NCBI: NC_013757

Host Lineage: Geodermatophilus obscurus; Geodermatophilus; Geodermatophilaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Soil from the Amargosa desert in Nevada; Country: USA; Temp: Mesophile; Temp: 28C. It is a member of the Actinomycetales that grows in dry soil or on the surfaces of rocks and monuments. Aerobic Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1212454675925515Island text1.5644413.290417.1649Neighbours11BLASTN+21245.gbk
236897341230243330Island text1.7738411.48469.13376Neighbours11BLASTN+IslandViewer 368973.gbk
342176044439522636Island text1.9513110.63628.45376Neighbours11BLASTN+IslandViewer 421760.gbk
472998676859938614Island text1.9743810.83289.23893Neighbours11BLASTN+IslandViewer 729986.gbk
578083581363532801Island text2.6533613.339814.6159NeighboursBLASTN+IslandViewer 780835.gbk
690050091836917870Island text1.869689.9981811.8346Neighbours11BLASTN+IslandViewer 900500.gbk
71212308124581133504Island text1.6627710.743812.8362Neighbours11BLASTNIslandViewer 1212308.gbk
81343396*136140718012Island text1.9900810.633514.2161Neighbours11BLASTN1343396.gbk
91438812147359934788Island text1.6767910.54159.64005Neighbours11BLASTNIslandViewer 1438812.gbk
101499643151759917957Island text2.8009510.60629.58704Neighbours11BLASTN+IslandViewer 1499643.gbk
111544348*158219937852Island text3.2794513.289411.0721Neighbours11BLASTN+IslandViewer 1544348.gbk
121732747*175064117895Island text1.5139510.961811.3595Neighbours11BLASTN+1732747.gbk
131888850*193149042641Island text2.1406812.555511.6165Neighbours11BLASTN+IslandViewer 1888850.gbk
142046000206434218343Island text1.6298810.90313.8476Neighbours11BLASTNIslandViewer 2046000.gbk
152630000265209922100Island text1.4463810.931412.6812Neighbours11BLASTN+2630000.gbk
162659930267925419325Island text1.5116211.19298.64904Neighbours11BLASTN2659930.gbk
172706835275100644172Island text1.7923211.88613.2708Neighbours11BLASTN+IslandViewer 2706835.gbk
182858327287756419238Island text1.5604311.36117.06237Neighbours11BLASTN+2858327.gbk
193012130303570423575Island text1.7837512.387211.38NeighboursBLASTN+IslandViewer 3012130.gbk
203100515*312110420590Island text1.9177710.649712.9127Neighbours11BLASTN+IslandViewer 3100515.gbk
213613438364063927202Island text2.8316414.949511.0607Neighbours11BLASTN+IslandViewer 3613438.gbk
223651646*369128339638Island text3.9442512.951410.9176Neighbours11BLASTN+IslandViewer 3651646.gbk
233717500374103323534Island text1.6537112.08113.8988Neighbours11BLASTN+IslandViewer 3717500.gbk
243753241377971326473Island text1.9753212.368312.3849Neighbours11BLASTN+IslandViewer 3753241.gbk
253897413393181534403Island text2.4141112.995113.5873Neighbours11BLASTNIslandViewer 3897413.gbk
264707960*474173433775Island text1.5027715.046923.3564Neighbours8BLASTN4707960.gbk