Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013745: Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, complete

NCBI: NC_013745

Host Lineage: Haloterrigena turkmenica; Haloterrigena; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile. Haloterrigena turkmenica, formerly Halococcus turkmenicus, is a halophilic archaeon isolated from soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1104385*16102456640Island text2.115534.364124.805Neighbours12BLASTN+104385.gbk
217770021289235193Island text1.9902433.981228.029Neighbours12BLASTN+177700.gbk
337132239414022819Island text1.6474830.119222.1221Neighbours12BLASTN+371322.gbk