Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013744: Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, complete

NCBI: NC_013744

Host Lineage: Haloterrigena turkmenica; Haloterrigena; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile. Haloterrigena turkmenica, formerly Halococcus turkmenicus, is a halophilic archaeon isolated from soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1159861*18219222332Island text1.4966226.586824.3452Neighbours12BLASTN+159861.gbk
225270227233119630Island text1.5101326.325425.1249Neighbours12BLASTN+252702.gbk
330000034424844249Island text2.4154433.644622.4582Neighbours12BLASTN+300000.gbk
434929737635227056Island text1.8321229.7724.875Neighbours12BLASTN+349297.gbk
546252048304820529Island text1.5602826.316320.3009Neighbours12BLASTN462520.gbk