Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013743: Haloterrigena turkmenica DSM 5511, complete genome

NCBI: NC_013743

Host Lineage: Haloterrigena turkmenica; Haloterrigena; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile. Haloterrigena turkmenica, formerly Halococcus turkmenicus, is a halophilic archaeon isolated from soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1375459*40216226704Island text2.3562927.477819.6515Neighbours11BLASTN+IslandViewer 375459.gbk
2505842*53100825167Island text2.4551828.927133.3911Neighbours11BLASTN+505842.gbk
31045488*107014124654Island text1.7751522.445718.4436Neighbours11BLASTNIslandViewer 1045488.gbk
41281500130759926100Island text2.5167927.51725.1096Neighbours12BLASTN+IslandViewer 1281500.gbk
51450417*147310922693Island text2.3028324.604821.6077Neighbours12BLASTN+IslandViewer 1450417.gbk
61937125*196139424270Island text2.3439228.955429.2905Neighbours11BLASTN1937125.gbk
73020687304009919413Island text1.5754117.554314.1471Neighbours11BLASTN3020687.gbk
83193355321180118447Island text1.5160321.239716.756Neighbours11BLASTN3193355.gbk
93599226361859919374Island text1.5078217.850219.3852Neighbours11BLASTN+3599226.gbk
103681235*370583224598Island text2.1723228.917830.2254Neighbours11BLASTN3681235.gbk