Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013741: Archaeoglobus profundus DSM 5631, complete genome

NCBI: NC_013741

Host Lineage: Archaeoglobus profundus; Archaeoglobus; Archaeoglobaceae; Archaeoglobales; Euryarchaeota; Archaea

General Information: Isolation: Deep sea hydrothermal vents; Mexico, Temp: Hyperthermophile; Temp: 85C; Habitat: Deep sea, Hydrothermal vent, Marine. This organism was isolated from a deep sea hydrothermal vent in the Guaymas Basin in the Gulf of California.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127353*5372726375Island text1.9167329.032445.9507Neighbours21BLASTN27353.gbk
2302415*32159919185Island text1.7273127.936544.4908Neighbours36BLASTN+302415.gbk
3424278*44357819301Island text1.9786427.684248.7717Neighbours21BLASTN+IslandViewer 424278.gbk
456538958988224494Island text1.7119827.05848.9524Neighbours21BLASTN+565389.gbk
5687546*71148323938Island text1.7888225.553344.6948Neighbours21BLASTN+687546.gbk
6809030*82909720068Island text1.5319927.28340.8698Neighbours21BLASTN809030.gbk
7838243*85793619694Island text1.8338926.949640.6444Neighbours21BLASTN+838243.gbk
81037176*106447927304Island text2.6132346.395536.2114Neighbours36BLASTN+1037176.gbk
91068170109195123782Island text1.6757533.772540.444Neighbours21BLASTN+1068170.gbk
101110672*113061719946Island text1.5334727.737938.0467Neighbours21BLASTN1110672.gbk
111144592*118332738736Island text2.4208431.799952.5141Neighbours21BLASTN1144592.gbk
121196997*121863521639Island text1.9053428.477647.4418Neighbours21BLASTN1196997.gbk
131275555129228516731Island text1.5917728.683138.8819Neighbours36+1275555.gbk
141304000*132631822319Island text1.6633227.851440.4191Neighbours21BLASTN1304000.gbk
151390823*141480423982Island text1.6231433.144651.0361Neighbours36BLASTN+1390823.gbk