Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013740: Acidaminococcus fermentans DSM 20731, complete genome

NCBI: NC_013740

Host Lineage: Acidaminococcus fermentans; Acidaminococcus; Acidaminococcaceae; Selenomonadales; Firmicutes; Bacteria

General Information: Isolation: Pig gut; Temp: Mesophile; Temp: 37C; Habitat: Host, Intestinal tract. Anaerobic Gram-negative bacterium . Acidaminococcus fermentans was isolated from a pig gut. This organism can utilize amino acids as the sole source of energy for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115401*3926023860Island text1.9118331.344254.2514Neighbours33BLASTN+15401.gbk
2571879*59737325495Island text1.6505833.200129.1548Neighbours32BLASTN+571879.gbk
3660880*70517344294Island text4.3419846.26629.3794Neighbours32BLASTN660880.gbk
4842841*88459941759Island text4.165944.743525.8605Neighbours32BLASTN+IslandViewer 842841.gbk
51081454110526923816Island text1.6430336.339724.5823Neighbours31BLASTN1081454.gbk
61178370121059932230Island text2.9336739.768828.4583Neighbours32BLASTN+IslandViewer 1178370.gbk
71218429*127910360675Island text2.5500839.052926.4533Neighbours32BLASTN+IslandViewer 1218429.gbk
81943740*197388330144Island text2.451138.076639.4435Neighbours32BLASTN+IslandViewer 1943740.gbk
92141523*216409922577Island text1.4367536.144219.4908Neighbours33BLASTN+IslandViewer 2141523.gbk
102218215223676418550Island text1.5049931.985718.163Neighbours32BLASTN+2218215.gbk