Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013732: Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequence

NCBI: NC_013732

Host Lineage: Spirosoma linguale; Spirosoma; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Isolation: Laboratory water bath; Temp: Mesophile; Temp: 20 - 30C; Habitat: Fresh water, Fresh water, Soil. Spirosoma linguale has been isolated from soil and fresh water. This bacterium is very pleomorphic with a cell shape appearing as filaments, helices, coils, rings and horseshoes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1136673*15849921827Island text1.5963629.720935.3393Neighbours39BLASTN+136673.gbk