Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013730: Spirosoma linguale DSM 74, complete genome

NCBI: NC_013730

Host Lineage: Spirosoma linguale; Spirosoma; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Isolation: Laboratory water bath; Temp: Mesophile; Temp: 20 - 30C; Habitat: Fresh water, Fresh water, Soil. Spirosoma linguale has been isolated from soil and fresh water. This bacterium is very pleomorphic with a cell shape appearing as filaments, helices, coils, rings and horseshoes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1588408228023441Island text2.3428238.110534.6637Neighbours39BLASTN+IslandViewer 58840.gbk
214062115923118611Island text1.492333.925132.4339Neighbours39BLASTN+140621.gbk
329631232062924318Island text1.7025638.416636.6479BLASTN296312.gbk
4778076*79959921524Island text1.7952733.341419.5456Neighbours39BLASTNIslandViewer 778076.gbk
5834500*86926634767Island text1.8387333.763926.7531Neighbours39BLASTN+IslandViewer 834500.gbk
690638993303226644Island text1.8219431.867129.2971Neighbours39BLASTN+906389.gbk
7933089*95693923851Island text2.1090537.768429.5123Neighbours39+933089.gbk
81074393110074926357Island text2.032836.155727.6184Neighbours39BLASTN+IslandViewer 1074393.gbk
91342500*136009917600Island text1.8197437.047157.912Neighbours39BLASTN1342500.gbk
101388333141544327111Island text2.4797737.236127.7191Neighbours39BLASTN1388333.gbk
111572889*159761124723Island text2.0048534.915224.5269Neighbours39BLASTN+1572889.gbk
121948484196979321310Island text2.0422934.955621.3181Neighbours39BLASTN+1948484.gbk
132187898221028922392Island text1.4780532.484229.3824Neighbours39BLASTN+IslandViewer 2187898.gbk
142359939239310633168Island text2.1396438.478823.9106Neighbours41BLASTN+IslandViewer 2359939.gbk
152403930*242803524106Island text2.2727635.267126.3942Neighbours39BLASTN2403930.gbk
162490000*251472424725Island text1.5867430.444431.2401Neighbours39BLASTN2490000.gbk
172558999259809939101Island text3.0056441.939726.702Neighbours39BLASTN+IslandViewer 2558999.gbk
182751484*279060339120Island text2.4178538.676722.7646Neighbours39BLASTN+IslandViewer 2751484.gbk
192799287282116221876Island text1.6944432.797329.6721Neighbours39BLASTN+2799287.gbk
203137391*316188124491Island text2.0125332.224621.5224Neighbours39BLASTN+3137391.gbk
213184602*320259917998Island text1.6562733.988955.9599Neighbours39BLASTN3184602.gbk
223208571*324592137351Island text3.1657242.273323.2809Neighbours39BLASTN+IslandViewer 3208571.gbk
233695674371990324230Island text1.6546331.802236.0828Neighbours39BLASTN+IslandViewer 3695674.gbk
243729626*375717427549Island text2.0760435.299933.2905Neighbours39BLASTN+IslandViewer 3729626.gbk
253863581388415620576Island text1.8927331.93430.8308Neighbours39BLASTN+3863581.gbk
263956457*398685130395Island text1.7821235.771233.835Neighbours39BLASTN+IslandViewer 3956457.gbk
274118355414241724063Island text2.0184835.411126.4078Neighbours39BLASTN4118355.gbk
284399643*441809918457Island text1.4947631.195327.0679Neighbours39BLASTNIslandViewer 4399643.gbk
294440943446804827106Island text1.595937.168327.8781Neighbours21BLASTN+IslandViewer 4440943.gbk
304502965452559922635Island text1.7541739.09919.2356Neighbours39BLASTN+IslandViewer 4502965.gbk
314573077459609923023Island text1.3025933.171229.2179Neighbours39BLASTNIslandViewer 4573077.gbk
324636575466101424440Island text2.0595734.67229.7338Neighbours394636575.gbk
334811911*483229120381Island text1.6176332.721327.599Neighbours39BLASTN+IslandViewer 4811911.gbk
344857090488052223433Island text2.0062734.516124.5919Neighbours39BLASTN+4857090.gbk
354914000493739123392Island text1.8642230.584325.5147Neighbours39BLASTN4914000.gbk
364955659498425728599Island text1.863233.835844.7492Neighbours39BLASTNIslandViewer 4955659.gbk
375088063511609928037Island text4.0831842.756216.8097Neighbours39BLASTN+IslandViewer 5088063.gbk
385173405519418820784Island text1.5537736.941330.0871IslandViewer 5173405.gbk
395372608*539330220695Island text1.6014530.319820.5293Neighbours39BLASTN+5372608.gbk
405538323556231523993Island text2.3253237.940131.7335Neighbours39BLASTN+IslandViewer 5538323.gbk
415877879590618428306Island text2.0985137.231530.2145Neighbours39IslandViewer 5877879.gbk
425914142593788123740Island text1.8283534.194326.8709Neighbours395914142.gbk
435989387602360234216Island text4.900844.06220.318Neighbours21BLASTNIslandViewer 5989387.gbk
446471484649809126608Island text2.1816534.922423.2343Neighbours39BLASTN+IslandViewer 6471484.gbk
456707812*673613928328Island text2.0379536.324834.9575Neighbours39BLASTN6707812.gbk
466791311681330721997Island text1.8568738.67227.1044Neighbours39BLASTN+IslandViewer 6791311.gbk
476901725*692481323089Island text1.6420235.329540.0069Neighbours39BLASTN+6901725.gbk
486933754697878245029Island text2.3560535.400924.4235Neighbours39BLASTN+6933754.gbk
497118798*715917840381Island text1.6446533.513939.6808Neighbours39BLASTN7118798.gbk
507267251729089423644Island text1.6467630.222534.9251Neighbours39BLASTN+7267251.gbk
517355010737701222003Island text1.6205231.949345.553Neighbours39BLASTN+7355010.gbk
527458076*747729019215Island text1.5716136.542831.4227BLASTN+IslandViewer 7458076.gbk
537743954*778046636513Island text3.1843139.275623.3011Neighbours39BLASTNIslandViewer 7743954.gbk