Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013729: Kribbella flavida DSM 17836, complete genome

NCBI: NC_013729

Host Lineage: Kribbella flavida; Kribbella; Nocardioidaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Soil from China; Temp: Mesophile; Temp: 28C; Habitat: Soil. Strictly aerobic, Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1380312*40421723906Island text1.7553212.392413.2871Neighbours11BLASTN+380312.gbk
2666406*68414717742Island text1.5195911.910318.8513Neighbours11BLASTN+666406.gbk
3863743*90229738555Island text1.841114.674613.8774Neighbours11BLASTN+863743.gbk
41556922*158209925178Island text1.9183115.532421.5739Neighbours11BLASTN1556922.gbk
52133294215209918806Island text1.6186512.581111.7574Neighbours11BLASTN2133294.gbk
62157785*219409936315Island text2.2674720.534426.7062Neighbours11BLASTN+IslandViewer 2157785.gbk
72258582228513126550Island text2.0137814.466414.2456Neighbours11BLASTN+IslandViewer 2258582.gbk
82287884231009922216Island text1.4851412.03197.62578Neighbours11BLASTN+IslandViewer 2287884.gbk
92813895*283559921705Island text1.640217.676930.1095Neighbours11BLASTN+IslandViewer 2813895.gbk
103573000*359711224113Island text2.174214.954118.7168Neighbours11BLASTN+IslandViewer 3573000.gbk
114507244*452709919856Island text1.4883411.697515.4526Neighbours11BLASTN4507244.gbk
124835452*485815922708Island text1.4776813.734214.1065Neighbours11BLASTN+4835452.gbk
134871430489059919170Island text1.6166711.993914.273Neighbours11BLASTN+4871430.gbk
144978401500265524255Island text1.4457711.527219.7405Neighbours11BLASTN4978401.gbk
155497814552037722564Island text1.4122212.2757.59532Neighbours11BLASTN+5497814.gbk
165982000600426322264Island text1.4950413.651418.2703Neighbours11BLASTN5982000.gbk
176217500*623574618247Island text1.5134811.563713.8446Neighbours11BLASTN6217500.gbk