Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013722: Xanthomonas albilineans, complete genome

NCBI: NC_013722

Host Lineage: Xanthomonas albilineans; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This bacterium causes the economically important leaf scald disease in sugar cane. Xanthomonas albilineans produces a potent toxin, albicidin, which is responsible for the characteristic whitening of sugar cane leaves and stunted plant growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121884723731118465Island text1.4954324.699130.6219Neighbours11BLASTNIslandViewer 218847.gbk
275147377584224370Island text1.8502728.778628.1715Neighbours11BLASTN+IslandViewer 751473.gbk
3850307*87951329207Island text1.546323.404142.4427Neighbours11BLASTNIslandViewer 850307.gbk
41425588144909923512Island text1.6955328.195929.1164Neighbours11BLASTN+IslandViewer 1425588.gbk
51577818160047922662Island text1.3692621.072539.6455Neighbours11BLASTN1577818.gbk
61689125*175227863154Island text2.1885330.685226.6176Neighbours11BLASTN+IslandViewer 1689125.gbk
71785692*183919253501Island text1.6474120.318638.4212Neighbours11BLASTN+IslandViewer 1785692.gbk
81816561*186559949039Island text1.5324222.610432.7009Neighbours11BLASTN+IslandViewer 1816561.gbk
91905655*193296127307Island text1.7732222.541230.2567Neighbours11BLASTN+IslandViewer 1905655.gbk
102150882*218450433623Island text2.6207131.058528.7977Neighbours11BLASTN+IslandViewer 2150882.gbk
112476236250064524410Island text1.7811725.825632.3195Neighbours11BLASTN+IslandViewer 2476236.gbk
122784000281050326504Island text1.5462221.479823.6874Neighbours11BLASTN+IslandViewer 2784000.gbk
132810721*284465133931Island text2.5291930.847225.07Neighbours11BLASTN+IslandViewer 2810721.gbk
142848366287177723412Island text1.5463724.051626.7572Neighbours11BLASTN+IslandViewer 2848366.gbk
152919560*294998930430Island text2.3702428.351824.6902Neighbours11BLASTN+IslandViewer 2919560.gbk
163022236304773125496Island text1.8994530.074722.8103Neighbours11BLASTN+3022236.gbk
173081459310680725349Island text1.5344422.511421.2127Neighbours11BLASTN+IslandViewer 3081459.gbk
183117442314053923098Island text1.4024923.826617.7671Neighbours11BLASTN+IslandViewer 3117442.gbk