Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013721: Gardnerella vaginalis 409-05, complete genome

NCBI: NC_013721

Host Lineage: Gardnerella vaginalis; Gardnerella; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Gardnerella vaginalis is a gram-variable, obligate anaerobic bacterium. The bacterium is the most prevalent sexually transmitted organism and associated with bacterial vaginosis. The bacterium has also been associated with bacteremia, urinary track infections, and neonatal meningitis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1276717*30391327197Island text1.6328240.067946.3413Neighbours47BLASTN276717.gbk
2430000*45214122142Island text1.4442331.620938.5552Neighbours47BLASTN+430000.gbk
353304857059937552Island text2.0955628.710133.4896Neighbours21BLASTN+IslandViewer 533048.gbk
482085284339322542Island text3.0540828.727132.9377Neighbours21BLASTNIslandViewer 820852.gbk
51091901*111409922199Island text2.2661834.411650.6973BLASTN+IslandViewer 1091901.gbk
61204566122544920884Island text1.5185429.796943.8787Neighbours21BLASTN+1204566.gbk
71397246*142235425109Island text1.6336835.170250.8771BLASTN1397246.gbk
81581370*160165720288Island text1.6460529.324247.1434Neighbours314BLASTN+1581370.gbk