Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013720: Pirellula staleyi DSM 6068, complete genome

NCBI: NC_013720

Host Lineage: Pirellula staleyi; Pirellula; Planctomycetaceae; Planctomycetales; Planctomycetes; Bacteria

General Information: Isolation: Freshwater Lake Lansing, Michigan, USA; Temp: Mesophile; Temp: 20 - 25C; Habitat: Fresh water. Pirellula staleyi DSM 6068 is commonly isolated from freshwater environments. Pirellula staleyi is a pear-shaped bacterium having a life cycle consisting of an aggregate-forming sessile (non-motile) form and a motile swarmer cell. They have a pirellulosome, a large nucleoid-containing cellular compartment, which is surrounded by a single membrane.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136178539110529321Island text1.861235.127726.3235Neighbours112BLASTN361785.gbk
2545829*57251426686Island text1.690830.895336.4525Neighbours112BLASTNIslandViewer 545829.gbk
31382561*140820425644Island text1.6665335.527932.1936Neighbours11BLASTN1382561.gbk
41405107143259927493Island text1.7550437.981824.314Neighbours112BLASTN+1405107.gbk
51605240163223826999Island text1.7514239.075929.7283Neighbours11BLASTN+IslandViewer 1605240.gbk
62898639291709918461Island text1.5014933.298927.1531Neighbours112IslandViewer 2898639.gbk
73925756*395075224997Island text1.4466329.280223.7727Neighbours11BLASTN+3925756.gbk
84826244485047124228Island text1.5919930.665325.4325Neighbours112BLASTN4826244.gbk
95769910*584826578356Island text1.7329935.272228.2446Neighbours112BLASTN+5769910.gbk