Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013715: Rothia mucilaginosa DY-18, complete genome

NCBI: NC_013715

Host Lineage: Rothia mucilaginosa; Rothia; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Rothia mucilaginosa is a gram-positive, cocci-shaped bacterium that inhabits the oral cavity. The bacterium is considered an opportunistic pathogen and has been associated with endocarditis, meningitis, and peritonitis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
198000*12026222263Island text1.6628128.173641.5824Neighbours11BLASTN+98000.gbk
219364721536121715Island text1.6516729.19455.1001Neighbours17BLASTN+193647.gbk
3699400*72209922700Island text1.3456128.81253.5693Neighbours11BLASTN+699400.gbk
4767722*79120723486Island text2.3216729.964154.7844Neighbours11BLASTN+767722.gbk
5890784*91633025547Island text1.6226427.492753.953Neighbours11BLASTN890784.gbk
61207774*124878041007Island text1.9421333.377446.9481Neighbours17BLASTN+IslandViewer 1207774.gbk
71376985*140051523531Island text1.9159733.099739.9435Neighbours11BLASTN+1376985.gbk
81445959146809922141Island text1.5192627.392450.6761Neighbours11BLASTN+1445959.gbk
91606396*162508418689Island text1.6742428.593154.2027Neighbours17BLASTN+1606396.gbk
101750403*177144221040Island text1.6385527.715651.0629Neighbours11BLASTN1750403.gbk
111886215190668320469Island text1.5833236.477634.7407Neighbours17BLASTN+IslandViewer 1886215.gbk
121907503*193078623284Island text1.8421730.274254.6747Neighbours11BLASTN1907503.gbk
132001862*202437322512Island text1.7862630.809257.1065Neighbours17BLASTN+2001862.gbk
142154695217759922905Island text1.8267230.115935.0559Neighbours17BLASTN+2154695.gbk