Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013665: Methanocella paludicola SANAE, complete genome

NCBI: NC_013665

Host Lineage: Methanocella paludicola; Methanocella; Methanocellaceae; Methanocellales; Euryarchaeota; Archaea

General Information: This strain was isolated in Japan from rice paddy samples. Strain SANAE belongs to the Rice Cluster I (RC-I), a 16S rRNA and mcrA gene sequences-defined euryarchaeal lineage within Methanosarcinales and Methanomicrobiales. The RC-I group plays a key role in releasing methane from rice fields, which accounts for 10 to 25% of the global methane emissions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1231023*25739126369Island text2.5863543.768225.5158Neighbours334+231023.gbk
225743828190324466Island text2.8381347.610735.2457Neighbours334BLASTN+IslandViewer 257438.gbk
341599843832222325Island text1.7245739.366526.1725Neighbours334BLASTN415998.gbk
473888376580526923Island text1.8111945.735445.6737Neighbours334BLASTN738883.gbk
5849508*91039460887Island text4.6065146.945529.0286Neighbours334BLASTN+IslandViewer 849508.gbk
6918313*97303454722Island text2.6587846.842827.2439Neighbours334BLASTNIslandViewer 918313.gbk
71123943114885424912Island text3.6441550.145523.8994Neighbours334BLASTN+IslandViewer 1123943.gbk
81392111*141561023500Island text2.5563842.449541.2657Neighbours334BLASTN+1392111.gbk
91591081164080949729Island text3.3000344.608230.11Neighbours334BLASTNIslandViewer 1591081.gbk
101766158*179759931442Island text5.3104354.974524.8186Neighbours334BLASTN+IslandViewer 1766158.gbk
111865122188680321682Island text1.6444636.294229.5712Neighbours334BLASTN+1865122.gbk
121922000195809936100Island text5.7294956.752719.9691Neighbours334BLASTN+IslandViewer 1922000.gbk
132074587*209709922513Island text2.6246642.460519.813Neighbours334BLASTN2074587.gbk
142132000215966127662Island text4.8551153.769725.5113Neighbours334BLASTN+IslandViewer 2132000.gbk
152176502219618819687Island text1.9286537.086628.1094Neighbours334BLASTN2176502.gbk
162495234252189626663Island text1.9269442.304429.8274Neighbours334BLASTN+2495234.gbk