Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013642: Thermotoga naphthophila RKU-10, complete genome

NCBI: NC_013642

Host Lineage: Thermotoga naphthophila; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Isolation: Production fluid of the Kubiki oil; Country: Japan; Temp: Thermophile; Temp: 80C; Habitat: Fresh water. Thermotoga naphthophila is an anaerobic thermophile, isolated from the production waters of the Kubiki oil reservoir in Niigata, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132379934694523147Island text1.5026226.301143.0686Neighbours317BLASTN+323799.gbk
240065143512634476Island text1.6933427.007327.115NeighboursBLASTNIslandViewer 400651.gbk
3505518*52957224055Island text1.5010724.39238.5248Neighbours317BLASTN505518.gbk
4545464*57230426841Island text1.4695924.598730.0341Neighbours317BLASTN+545464.gbk
557467359360518933Island text1.49129.444324.0711Neighbours317BLASTN+IslandViewer 574673.gbk
694276798225939493Island text1.5396127.528239.7016Neighbours317BLASTN+IslandViewer 942767.gbk
71317114*134822431111Island text1.9522327.552748.3744Neighbours317BLASTN1317114.gbk
81425795*145025424460Island text1.3876224.422445.7242Neighbours317BLASTN1425795.gbk