Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013595: Streptosporangium roseum DSM 43021, complete genome

NCBI: NC_013595

Host Lineage: Streptosporangium roseum; Streptosporangium; Streptosporangiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Vegetable garden soil; Temp: Mesophile; Temp: 28C; Habitat: Soil. This organism is a common soil bacterium. An aerobic Gram-positive bacterium isolated from vegetable garden soil in 1955.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1412456169920455Island text1.933214.477716.1388Neighbours11BLASTN+IslandViewer 41245.gbk
215150017859927100Island text3.6273821.548518.2043Neighbours11BLASTN+IslandViewer 151500.gbk
319649322011923627Island text2.1212418.20114.7399Neighbours11BLASTN+196493.gbk
423593126009924169Island text2.0511515.571614.027Neighbours11BLASTN+IslandViewer 235931.gbk
548000050266322664Island text2.0463811.694417.627Neighbours11BLASTNIslandViewer 480000.gbk
660609662549919404Island text2.2340413.53214.7156Neighbours11BLASTN+IslandViewer 606096.gbk
7702482*72809925618Island text1.5059113.427220.6663Neighbours11BLASTNIslandViewer 702482.gbk
889189791154419648Island text2.1924513.18416.3175Neighbours11BLASTN+IslandViewer 891897.gbk
91100230*112822127992Island text1.5599917.32128.1287Neighbours11BLASTN1100230.gbk
101851226187265321428Island text1.5774214.319420.846Neighbours11BLASTN+IslandViewer 1851226.gbk
112592590261118718598Island text1.9956813.18417.9924Neighbours11BLASTN2592590.gbk
123361505338409922595Island text1.8929213.354214.6851Neighbours11BLASTNIslandViewer 3361505.gbk
133388000*341046122462Island text1.7576813.34212.9187Neighbours11BLASTN+IslandViewer 3388000.gbk
143541012*356209921088Island text1.7279914.79649.16068Neighbours11BLASTN+IslandViewer 3541012.gbk
153712257373380621550Island text1.6893515.812720.5758Neighbours11BLASTN3712257.gbk
163952196*397137919184Island text1.6400113.79210.6286Neighbours11BLASTNIslandViewer 3952196.gbk
174031947*406329831352Island text2.7780220.454514.7933Neighbours11BLASTN+IslandViewer 4031947.gbk
184758034478379725764Island text1.6910313.833212.1899Neighbours11BLASTN4758034.gbk
194796436*482631829883Island text1.6767514.947312.9918Neighbours11BLASTN+4796436.gbk
204951396*497512223727Island text1.7718416.305922.194Neighbours11BLASTN+IslandViewer 4951396.gbk
215176000*519869322694Island text1.8682915.474216.7574Neighbours11BLASTN+IslandViewer 5176000.gbk
225221330524437223043Island text1.455813.472812.4497Neighbours11BLASTN+IslandViewer 5221330.gbk
235282207531442932223Island text1.5911314.12315.6466NeighboursBLASTN+5282207.gbk
245333000535220019201Island text1.5983913.640615.2165Neighbours11BLASTN+5333000.gbk
256831480685414322664Island text1.4308114.007814.2831Neighbours11BLASTN+IslandViewer 6831480.gbk
266978614699678018167Island text1.4991416.31224.2112Neighbours11BLASTN6978614.gbk
277109039714185932821Island text1.6977114.008420.6256Neighbours11BLASTN7109039.gbk
287195764721894723184Island text1.4690614.810322.4083NeighboursBLASTN7195764.gbk
297302888732647023583Island text2.0226714.782122.147Neighbours11BLASTN+7302888.gbk
307716759774959932841Island text1.602514.350120.7069Neighbours11BLASTNIslandViewer 7716759.gbk
318162181819649034310Island text2.1251317.022516.5988Neighbours11BLASTN+8162181.gbk
328338619836410525487Island text2.3117316.668316.8217Neighbours11BLASTN8338619.gbk
338553904*857655422651Island text1.6953914.3313.3268Neighbours11BLASTN+8553904.gbk
348603188863891935732Island text1.8465513.70319.1416Neighbours11BLASTNIslandViewer 8603188.gbk
358898533891861920087Island text1.4950116.156225.3977Neighbours11BLASTN8898533.gbk
369149273*917160722335Island text1.5828417.753632.9036Neighbours11BLASTN9149273.gbk
379547254*957863931386Island text1.6060715.576414.5308Neighbours11BLASTN+IslandViewer 9547254.gbk
389651019967397022952Island text3.2368815.061418.0574Neighbours11BLASTN9651019.gbk
399994000*1001201918020Island text1.5698213.472810.3789Neighbours11BLASTNIslandViewer 9994000.gbk
4010329633*1035599926367Island text1.5572313.752416.6464Neighbours11BLASTN10329633.gbk