Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013592: Dickeya dadantii Ech586, complete genome

NCBI: NC_013592

Host Lineage: Dickeya dadantii; Dickeya; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile. Dickeya dadantii formerly Erwinia chrysanthemi is a phytopathogenic bacterium that causes soft rot diseases on many crops. This organism produces pectinolytic enzymes which break down plant cell walls allowing for the spread of disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1446092*46819222101Island text1.6529635.372132.7742Neighbours41BLASTN+IslandViewer 446092.gbk
2577831*59805520225Island text1.5302433.846135.321Neighbours41BLASTN577831.gbk
3713036*76182148786Island text3.3373348.549239.523Neighbours41BLASTN+IslandViewer 713036.gbk
480428883459430307Island text2.3318841.049820.178Neighbours41BLASTN+IslandViewer 804288.gbk
5956829*98781830990Island text3.510847.124524.5397Neighbours41BLASTN+IslandViewer 956829.gbk
61056500*108285526356Island text2.2122137.255425.6696Neighbours41BLASTNIslandViewer 1056500.gbk
71424560145021625657Island text1.8821441.241843.5021Neighbours51BLASTNIslandViewer 1424560.gbk
81465015148872023706Island text1.4958534.818820.3862Neighbours41BLASTN+IslandViewer 1465015.gbk
91602242162704324802Island text1.6464332.411217.091Neighbours11BLASTN+IslandViewer 1602242.gbk
101668092*170683538744Island text1.671333.143431.225Neighbours41BLASTN+1668092.gbk
111730505*176316532661Island text1.5625433.687429.3521Neighbours41BLASTN1730505.gbk
122059138209167632539Island text2.7750941.137327.8605Neighbours41BLASTN+IslandViewer 2059138.gbk
132160000218320623207Island text1.464833.487431.2279Neighbours51BLASTN+2160000.gbk
142338403*235809919697Island text1.9520234.126718.3177Neighbours41BLASTN+IslandViewer 2338403.gbk
152703327272585222526Island text1.7817131.862729.09Neighbours41BLASTN+IslandViewer 2703327.gbk
162968500*300769039191Island text2.665943.495832.0734Neighbours41BLASTN+IslandViewer 2968500.gbk
173212834324883336000Island text2.0169838.623727.656Neighbours41BLASTN+IslandViewer 3212834.gbk
183263005329243329429Island text2.9068745.220230.7068Neighbours41BLASTN+IslandViewer 3263005.gbk
193397304341695019647Island text1.8535632.680834.584Neighbours51BLASTN+3397304.gbk
203618248*363709918852Island text1.5477834.458144.4005Neighbours51BLASTN3618248.gbk
214295449432044224994Island text2.2847140.827529.5731Neighbours41BLASTN+IslandViewer 4295449.gbk
224511478453986728390Island text3.7296751.066241.0423NeighboursBLASTNIslandViewer 4511478.gbk