Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013532: Anaplasma centrale str. Israel, complete genome

NCBI: NC_013532

Host Lineage: Anaplasma centrale; Anaplasma; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: The Anaplasma centrale Israel strain was established in the 1950's upon acquisition of the strain from South Africa where it was first identified. Anaplasma centrale infects the red blood cells of cattle and, in many parts of the world, is used as a live vaccine against the more virulent Anaplasma marginale which causes anaplasmosis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185371*10357718207Island text1.5829335.770333.1039Neighbours21BLASTN+IslandViewer 85371.gbk