Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013530: Xylanimonas cellulosilytica DSM 15894, complete genome

NCBI: NC_013530

Host Lineage: Xylanimonas cellulosilytica; Xylanimonas; Promicromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Decaying tree in Salamanca Spain; Temp: Mesophile; Temp: 28C; Habitat: Soil. An aerobic, chemoorganotrophic, xylanolytic Gram-positive bacterium. This species was first isolated from a decaying tree in Salamanca, Spain. It produces abundant cellulases and xylanases.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114928118245433174Island text2.1345817.920220.2081Neighbours11BLASTN+IslandViewer 149281.gbk
242354044649822959Island text1.476313.886210.4093Neighbours11BLASTN+423540.gbk
31649214168158732374Island text2.6653117.825920.401Neighbours11BLASTN+IslandViewer 1649214.gbk
41728641175062521985Island text2.5148915.065115.014Neighbours11BLASTN+IslandViewer 1728641.gbk
52492312252459632285Island text1.7228714.759312.6505Neighbours11BLASTN+IslandViewer 2492312.gbk
62819569285198132413Island text3.4042320.336119.923Neighbours11BLASTN+IslandViewer 2819569.gbk
73082587310336420778Island text1.5417113.070311.223Neighbours11BLASTN+3082587.gbk
83204825*324234937525Island text3.5905819.247422.4595Neighbours11BLASTN+IslandViewer 3204825.gbk
93365742*338937923638Island text1.807212.29949.82458Neighbours11BLASTN+IslandViewer 3365742.gbk