Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013526: Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome

NCBI: NC_013526

Host Lineage: Thermobaculum terrenum; Thermobaculum; ; ; Thermobaculum; Bacteria

General Information: Isolation: Soil in Yellowstone National Park; Country: USA; Temp: Thermophile; Temp: 65 - 92C; Habitat: Soil. Thermobaculum terrenum is a hyperthermophile, able to grow at temperatures of up to 92 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1654958970524211Island text2.1490926.028942.1727Neighbours11BLASTN+65495.gbk
210519513231427120Island text2.1694925.520734.9141Neighbours11+105195.gbk
331607534168125607Island text3.232236.178727.4451Neighbours11BLASTN+IslandViewer 316075.gbk
443981347960839796Island text2.5667729.600223.4288Neighbours11BLASTN+IslandViewer 439813.gbk
553021255052620315Island text1.8880323.811417.1357Neighbours11BLASTN+530212.gbk
656750058776420265Island text1.8687723.133531.7944Neighbours11BLASTN567500.gbk
783511785824623130Island text1.9164123.206529.7417Neighbours11BLASTN+835117.gbk
891190995012638218Island text1.6659722.785621.5631Neighbours11BLASTN+911909.gbk
995584898014224295Island text1.7480624.291329.9488Neighbours11955848.gbk
101034035105612622092Island text1.8004226.709232.7012BLASTN1034035.gbk