Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013524: Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genome

NCBI: NC_013524

Host Lineage: Sphaerobacter thermophilus; Sphaerobacter; Sphaerobacteraceae; Sphaerobacterales; Chloroflexi; Bacteria

General Information: Isolation: thermal treated municipal sewage sludge; Country: Germany; Temp: Thermophile; Temp: 55C; Habitat: Sludge. An obligate aerobic, thermophilic Gram-positive bacterium. Sphaerobacter thermophilus is a thermophilic microorganism which can be isolated from sludge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117152419970728184Island text2.6514721.179516.7855Neighbours11BLASTN+IslandViewer 171524.gbk
231481434205827245Island text1.9995217.797817.314Neighbours11BLASTN+IslandViewer 314814.gbk
339208941440922321Island text1.709317.198617.2494Neighbours11BLASTN+392089.gbk
496903899379224755Island text1.4807915.053516.2017Neighbours11BLASTN+969038.gbk
51150725117409923375Island text1.5023314.135526.9278Neighbours11BLASTN1150725.gbk
61207845123009922255Island text1.4411517.60721.9332Neighbours11BLASTN+1207845.gbk