Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013523: Sphaerobacter thermophilus DSM 20745 chromosome 1, complete genome

NCBI: NC_013523

Host Lineage: Sphaerobacter thermophilus; Sphaerobacter; Sphaerobacteraceae; Sphaerobacterales; Chloroflexi; Bacteria

General Information: Isolation: thermal treated municipal sewage sludge; Country: Germany; Temp: Thermophile; Temp: 55C; Habitat: Sludge. An obligate aerobic, thermophilic Gram-positive bacterium. Sphaerobacter thermophilus is a thermophilic microorganism which can be isolated from sludge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1959625*98302823404Island text1.4500915.442616.9692Neighbours11BLASTN+959625.gbk
22560000258264922650Island text1.5918914.804214.3684Neighbours11IslandViewer 2560000.gbk