Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013521: Sanguibacter keddieii DSM 10542, complete genome

NCBI: NC_013521

Host Lineage: Sanguibacter keddieii; Sanguibacter; Sanguibacteraceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Blood of dairy cows; Country: Spain; Temp: Mesophile; Temp: 25-30C; Habitat: Host. These bacteria are facultatively anaerobic, Gram-positive, short, irregular shaped motile rods.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110793712943721501Island text1.7623613.322115.0635Neighbours11BLASTN+107937.gbk
230257433716134588Island text2.6312519.161719.8431Neighbours11BLASTN+IslandViewer 302574.gbk
3345308*38171936412Island text2.4069321.062515.5188Neighbours11BLASTNIslandViewer 345308.gbk
471319673736624171Island text1.403313.746416.8352Neighbours11BLASTN+713196.gbk
594049596409923605Island text1.5086713.807117.6453Neighbours11BLASTN+940495.gbk
61619394164259923206Island text1.9816716.731514.8605Neighbours11BLASTN+1619394.gbk
71713416173359920184Island text1.7226813.557918.7477Neighbours11BLASTN1713416.gbk
81976331199753221202Island text1.5478215.307818.1955Neighbours8BLASTN1976331.gbk
92193203*221998826786Island text3.5813818.44616.9996Neighbours11BLASTN2193203.gbk
102254534*227574521212Island text1.5384912.63078.38866Neighbours11BLASTN+2254534.gbk
112924540295147426935Island text2.3641515.892516.3517Neighbours11BLASTN2924540.gbk
123204250*324548941240Island text1.9080514.579113.4218Neighbours11BLASTNIslandViewer 3204250.gbk
133285423*331709931677Island text1.601716.585823.6443Neighbours11BLASTN3285423.gbk
144240468*426799927532Island text1.6005715.278510.9575Neighbours11BLASTN4240468.gbk