Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013520: Veillonella parvula DSM 2008, complete genome

NCBI: NC_013520

Host Lineage: Veillonella parvula; Veillonella; Veillonellaceae; Selenomonadales; Firmicutes; Bacteria

General Information: Isolation: Intestinal tract; Country: France; Temp: Mesophile; Temp: 37C; Habitat: Human intestinal microflora, Human oral. Veillonella parvula is a small, nonfermentative, strictly anaerobic, gram-negative coccus. It is part of the normal flora of the mouth, gastrointestinal tract, and vagina in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
191961*11476922809Island text2.2076532.668650.41Neighbours325BLASTN+91961.gbk
212021414412923916Island text1.7637728.924535.5596Neighbours21+120214.gbk
353380355342119619Island text1.4776627.140141.424Neighbours21BLASTNIslandViewer 533803.gbk
4571647*59373522089Island text3.1642129.172750.1076Neighbours21BLASTN571647.gbk
5718732*73509916368Island text2.5276528.933547.5563Neighbours21BLASTN718732.gbk
61559000*158088621887Island text2.2701629.54548.2418Neighbours21BLASTN+1559000.gbk
71638000*166372025721Island text1.6297229.217244.1029Neighbours21BLASTN+IslandViewer 1638000.gbk
81860286187917418889Island text1.6685427.026645.5232BLASTN+1860286.gbk
91905554*192965024097Island text1.7010731.028134.3289Neighbours21BLASTN+1905554.gbk
101936209195559919391Island text1.517331.150744.4979Neighbours21+1936209.gbk