Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013512: Sulfurospirillum deleyianum DSM 6946, complete genome

NCBI: NC_013512

Host Lineage: Sulfurospirillum deleyianum; Sulfurospirillum; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Isolation: Mud, forest pond sediment in Germany; Temp: Mesophile; Habitat: Sediment. Microaerophilic, sulfur-reducing Gram-negative bacterium isolated from freshwater pond sediment. Sulfurospirillum deleyianum can be isolated from freshwater pond sediment and is able to reduce elemental sulfur as an electron acceptor.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1126915*15204625132Island text1.7013525.14951.3278Neighbours314BLASTN126915.gbk
2995251102865033400Island text1.6140926.682143.2686Neighbours21BLASTNIslandViewer 995251.gbk