Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013510: Thermomonospora curvata DSM 43183, complete genome

NCBI: NC_013510

Host Lineage: Thermomonospora curvata; Thermomonospora; Thermomonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Municipal refuse compost samples; Temp: Thermophile; Temp: 65C. An aerobic, cellulolytic, thermophilic Gram-positive bacterium isolated from straw compost. Thermomonospora curvata is a thermophilic bacterium which produces a number of industrially important compounds like cellulase, alpha-amylase, and polygalacturonate lyase.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1865618656Island text1.4765916.591721.2145Neighbours11BLASTN1.gbk
239975*6221822244Island text1.8656914.393824.1686Neighbours11BLASTN+IslandViewer 39975.gbk
3170199*20517334975Island text2.7599721.538417.8227Neighbours11BLASTNIslandViewer 170199.gbk
4262888*28309920212Island text1.6648715.619913.4767Neighbours11BLASTNIslandViewer 262888.gbk
532999934971919721Island text2.2359114.214518.4158Neighbours11BLASTN329999.gbk
646518848860723420Island text2.4784715.556719.3187Neighbours11BLASTNIslandViewer 465188.gbk
7517878*56251444637Island text1.9568915.979619.8081Neighbours11BLASTN+IslandViewer 517878.gbk
867536869974624379Island text1.7054816.272120.3427Neighbours11BLASTNIslandViewer 675368.gbk
974704277346526424Island text2.5614718.677922.1111Neighbours11BLASTN+747042.gbk
1081052583159921075Island text1.7642615.776111.7473Neighbours11BLASTN+IslandViewer 810525.gbk
1185699787561618620Island text1.7065513.632914.7765Neighbours11BLASTNIslandViewer 856997.gbk
12888542*91609927558Island text3.1389220.598222.8338Neighbours11BLASTNIslandViewer 888542.gbk
13991827*101259920773Island text1.8900416.005424.983Neighbours11BLASTNIslandViewer 991827.gbk
141023348104559922252Island text1.740414.786414.0011Neighbours11BLASTNIslandViewer 1023348.gbk
151295439131735721919Island text1.7621814.624317.726Neighbours11BLASTN1295439.gbk
161614000163174917750Island text1.7066213.545716.3357Neighbours11BLASTNIslandViewer 1614000.gbk
171637730*166519927470Island text1.9233918.254922.9051Neighbours11BLASTN+1637730.gbk
181703464172659923136Island text1.9329515.15617.2768Neighbours11BLASTNIslandViewer 1703464.gbk
191786194*181369827505Island text3.6922721.505928.8106Neighbours11BLASTNIslandViewer 1786194.gbk
201849751*187248222732Island text1.689313.827513.9932Neighbours11BLASTN1849751.gbk
212288746230946520720Island text1.7392315.362715.5602Neighbours11BLASTNIslandViewer 2288746.gbk
222432879245155818680Island text1.4535414.275316.6585Neighbours11BLASTN2432879.gbk
232521186*254753326348Island text2.927820.645824.4731Neighbours11BLASTN2521186.gbk
242782240*280526223023Island text1.8918314.686726.79Neighbours11BLASTN+IslandViewer 2782240.gbk
252937530*296330725778Island text1.9186816.198614.7579Neighbours11BLASTN2937530.gbk
263032114*305663624523Island text1.8963816.671714.6434Neighbours11BLASTNIslandViewer 3032114.gbk
273065000*309079525796Island text3.6832719.894727.266Neighbours11BLASTN3065000.gbk
283117837*315092333087Island text1.7689414.409213.3005Neighbours11BLASTN+IslandViewer 3117837.gbk
293324978*334783522858Island text1.5680715.988224.4726Neighbours11BLASTN+3324978.gbk
303640776*365896018185Island text1.4863514.974527.9937Neighbours11BLASTN3640776.gbk
314319296*434009920804Island text1.7777514.569910.9279Neighbours11BLASTN4319296.gbk
324484000*450600622007Island text2.0995317.358517.031Neighbours11BLASTN+4484000.gbk
334960500*498486224363Island text1.7179616.731514.7186Neighbours11BLASTN+IslandViewer 4960500.gbk
345115500*514328527786Island text1.849217.999515.8265Neighbours11BLASTN+5115500.gbk
355175649*519917923531Island text1.4381614.032113.8019Neighbours11BLASTN5175649.gbk
365309143533321324071Island text1.9736615.984717.5057Neighbours11BLASTNIslandViewer 5309143.gbk
375394432*543843244001Island text1.5113215.002315.1784Neighbours11BLASTN5394432.gbk
385499447554883349387Island text2.590418.657220.9185Neighbours11BLASTNIslandViewer 5499447.gbk