Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013508: Edwardsiella tarda EIB202, complete genome

NCBI: NC_013508

Host Lineage: Edwardsiella tarda; Edwardsiella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Edwardsiella tarda is a Gram-negative member of the normal gut microflora of fish, humans, chickens and other animals. This organism is also a serious pathogen of marine and freshwater fish and has been isolated from channel catfish, Japanese eels, flounder, tilapia, and other economically important fish. Infection by this organism is characterized by septicemia, internal abscesses, and skin lesions. This disease is often associated with poor water quality and mortality in aquaculture can be high. Edwardsiella tarda also causes opportunistic infections in humans, most commonly gastroenteritis and wound infections. However, this organism has been isolated from cases of septicemia and meningitis, primarily in immunocompromised patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126348*5519528848Island text4.4058146.599827.1662Neighbours41BLASTN+IslandViewer 26348.gbk
2639148559921686Island text1.6853232.53133.4403Neighbours51BLASTN63914.gbk
3275081*30064325563Island text2.8719939.255430.0311Neighbours51BLASTN+275081.gbk
434361737314529529Island text3.951144.31837.7622Neighbours51BLASTN+IslandViewer 343617.gbk
5876431*91551339083Island text3.2833841.728231.1668Neighbours51BLASTN+IslandViewer 876431.gbk
61262333128284320511Island text1.8017932.869223.1015Neighbours51BLASTN+1262333.gbk
71289159*133392244764Island text4.3810944.797139.5606Neighbours51BLASTN+IslandViewer 1289159.gbk
81351447*137533523889Island text1.6271430.757533.713Neighbours51BLASTN+1351447.gbk
91491945*152068628742Island text5.0061850.4230.6831Neighbours41BLASTN+IslandViewer 1491945.gbk
101687432172109933668Island text2.5524439.390634.115Neighbours51BLASTN+IslandViewer 1687432.gbk
111862896188607023175Island text1.701233.073430.5491Neighbours51BLASTN+IslandViewer 1862896.gbk
122130681*216209931419Island text3.015342.243523.389Neighbours51BLASTN+IslandViewer 2130681.gbk
132356865*238859931735Island text3.950644.507740.0108Neighbours51BLASTN+IslandViewer 2356865.gbk
142587913*262259934687Island text2.6036539.696437.4147Neighbours41BLASTN+IslandViewer 2587913.gbk
152870954*288859917646Island text1.6139631.778935.8692Neighbours51BLASTN+IslandViewer 2870954.gbk
163188978324937660399Island text2.5389737.022237.7081Neighbours41BLASTN+IslandViewer 3188978.gbk
173387272*341154824277Island text1.598937.070747.007Neighbours51BLASTNIslandViewer 3387272.gbk
183593000361400721008Island text1.7345934.470643.2375Neighbours51BLASTN+IslandViewer 3593000.gbk