Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013504: Lactobacillus johnsonii FI9785 chromosome, complete genome

NCBI: NC_013504

Host Lineage: Lactobacillus johnsonii; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus johnsonii is found in the human gut. It is a member of the acidophilus group of intestinal lactobacilli that has been extensively studied for their "probiotic" activities.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1447891*47477226882Island text3.5097723.923242.1915Neighbours21BLASTN447891.gbk
21388480*141200723528Island text1.6505921.881138.5226Neighbours21BLASTN+IslandViewer 1388480.gbk
31468227*150060232376Island text3.0181525.737343.44Neighbours21BLASTN+1468227.gbk
41648551*167716128611Island text3.4178424.466942.2077Neighbours21BLASTN1648551.gbk