Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013502: Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence

NCBI: NC_013502

Host Lineage: Rhodothermus marinus; Rhodothermus; Rhodothermaceae; Bacteroidetes Order II; Bacteroidetes; Bacteria

General Information: Isolation: Submarine alkaline hot spring at Reykjanes; Country: Iceland; Temp: Thermophile; Temp: 65C; Habitat: Hot spring, Marine. This organism is a thermophilic bacterium which can grow at temperatures of up to 77 degrees C and at salt concentrations of over 6% NaCl. It has been isolated from shallow water geothermal habitats in Iceland, Portugal and Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110243013399931570Island text2.0697535.262629.2408Neighbours33BLASTN102430.gbk