Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013501: Rhodothermus marinus DSM 4252, complete genome

NCBI: NC_013501

Host Lineage: Rhodothermus marinus; Rhodothermus; Rhodothermaceae; Bacteroidetes Order II; Bacteroidetes; Bacteria

General Information: Isolation: Submarine alkaline hot spring at Reykjanes; Country: Iceland; Temp: Thermophile; Temp: 65C; Habitat: Hot spring, Marine. This organism is a thermophilic bacterium which can grow at temperatures of up to 77 degrees C and at salt concentrations of over 6% NaCl. It has been isolated from shallow water geothermal habitats in Iceland, Portugal and Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1176073*20175825686Island text1.8660620.991328.4931Neighbours11BLASTN176073.gbk
277794780373125785Island text1.4500119.011422.1891Neighbours11BLASTN777947.gbk
3931418*95819726780Island text2.3987629.647843.0661Neighbours11BLASTN931418.gbk
4990022101359923578Island text2.4722231.895350.4687Neighbours11BLASTN+990022.gbk
51140390116631625927Island text1.9979329.308136.7051Neighbours11BLASTN+IslandViewer 1140390.gbk
61300182132494224761Island text1.6628120.823830.3131Neighbours11BLASTN+1300182.gbk
71337489136033422846Island text1.4823719.139127.75Neighbours11BLASTN1337489.gbk
81547508*157227124764Island text1.5364521.564927.8779Neighbours11BLASTN+1547508.gbk
91691532*171518723656Island text1.5352720.300332.0685Neighbours11BLASTN1691532.gbk
101881692191056428873Island text2.0780231.85135.6858Neighbours11BLASTN1881692.gbk
112039339206844229104Island text1.8569827.935836.7839Neighbours11BLASTN2039339.gbk